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Message
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17:44 donsizemore
@pdurbin i'm finally back at my desk and jdk 1.8.0_162 made payara5 happy. now on to a different error and building dataverse with your changes to SearchIncludeFragment.java
17:46 pdurbin
donsizemore: ok, but what changes?
17:47 donsizemore
https://github.com/IQSS/dataverse/commit/153027390a701e0a54ce71f3249173de2a5993a5 and https://github.com/IQSS/dataverse/commit/6f72baa611f7304e7e5795467d5c9b0ef013ac2e
17:48 pdurbin
man that brings me back
17:50 donsizemore
the install script thinks it's running in docker (which is indeed installed and running)
17:56 pdurbin
sorry, I don't follow
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18:27 pdurbin
hi Shirley-CCG
18:29 Shirley-CCG
Hello Philip, I'm contacting you to know some details about the use of JSON file as you said on emails before.
18:31 Shirley-CCG
I sent you an email days ago but I think that you didn't receive it
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18:34 pdurbin
Oh! Did you send it to support
18:36 pameyer
donsizemore: when you're looking at payara5, have you checked with apache in front of it?
18:36 pameyer
I have vague and possibly inaccurate memories that there were issues with glassfish5 + apache that didn't show up with glassfish5 only, curious if the same is true for payara
18:37 donsizemore
@pameyer i've tried several builds of different dataverse branches, and it keeps failing to create the EJB table in the DB
18:37 donsizemore
@pameyer but i'll definitely stick it behind apache if i get that far
18:37 pdurbin
Shirley-CCG: I found the email you sent. It's in https://help.hmdc.harvard.edu/Ticket/Display.html?id=258597 . Let me read it now.
18:37 pameyer
donsizemore: sounds like a plan. I probably can't help much with EJB-created tables
18:38 donsizemore
@pameyer on intuition i blame payara5 and case-sensitive table names
18:39 pameyer
I have an irrational dislike of case-sensitive table names
18:46 Shirley-CCG
I wrote a reply over one of your mails
18:47 pdurbin
Shirley-CCG: yes I see it now. Sorry that I missed it back on May 15th.
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21:42 SamiSousa
In the API guide, the Data Access API outlines how to download a file and a set of files by id. Is there a shortcut to download a dataset directly?
21:42 pameyer
hi SamiSousa - I don't think that there is
21:43 SamiSousa
Okay, will download files within a dataset individually. Thanks!
21:43 pameyer
no problem - I'll take a quick look to double-check though
21:44 pameyer
double-check is negative :( there isn't a shortcut
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22:43 pdurbin
SamiSousa: there's an option to download all the files a zip but you have to feed it a list of file IDs
22:44 pdurbin
You should feel free to open a GitHub issue as a feature request.
22:45 SamiSousa
@pdurbin will do!
22:47 SamiSousa
Actually, I'm having a bit of trouble using the data access api to search for all the files in a dataset.
22:48 SamiSousa
I have a particular dataset in mind, which I'm able to single out with the API . Is there a way for me to list the files in the dataset? I'm thinking there might be something in the 'citation' field
23:00 pdurbin
SamiSousa: you should look at the "native" JSON at the dataset level. One sec.
23:00 pdurbin
This dataset of mine for example: https://dataverse.harvard.edu/dataset.xhtml?persistentId=doi:10.7910/DVN/TJCLKP
23:01 pdurbin
Click "Metadata" and then "Export Metadata" and then "JSON ".
23:01 pdurbin
You should end up at this URL : https://dataverse.harvard.edu/api/datasets/export?exporter=dataverse_json&persistentId=doi%3A10.7910/DVN/TJCLKP
23:03 pdurbin
I can get a list of file IDs like this: curl 'https://dataverse.harvard.edu/api/datasets/export?exporter=dataverse_json&persistentId=doi%3A10.7910/DVN/TJCLKP' | jq '.datasetVersion.files[].dataFile.id'
23:03 pdurbin
SamiSousa: I hope that helps.
23:07 SamiSousa
Yes! Thank you! I think I can get a similar result using the Native API , too
23:08 pdurbin
Yeah. It's kind of weird that we have both. Maybe there's a difference in the output. I'm not sure.
23:09 pdurbin
SamiSousa: did I already ask you which language you're using?
23:12 SamiSousa
For now, Python
23:13 SamiSousa
I'm planning on using Go and maybe JS later
23:13 pdurbin
SamiSousa: mmm, you should write client libraries for Go and JS for us. :)
23:14 SamiSousa
I'm no expert, but would love to help!
23:15 pdurbin
Nice. All of our client libraries are community-contributed. I create an empty git repo under IQSS and let people who are interested push code: http://guides.dataverse.org/en/4.8.5/api/client-libraries.html
23:16 pdurbin
Recently I was encouraging someone to create a PHP library for Dataverse: https://groups.google.com/d/msg/dataverse-community/2880Y6Vh3G0/eJPv3IcGBwAJ
23:16 pdurbin
It's worked out pretty well so far.
23:16 pdurbin
We're sort of looking for a maintainer for the Python library though.
