Time
S
Nick
Message
06:29 juancorr joined #dataverse
11:12 donsizemore joined #dataverse
13:14 Alexandre12 joined #dataverse
13:14 Alexandre12
Good morning guy!
13:15 Alexandre12
does anyone know how to replace the dataverse's default logo for a custon logo ? Something like Harvard dataverse..
13:16 Alexandre12
I was looking for the correct folder but I didn't find it
13:42 donsizemore
@Alexandre12 hello =) did you see http://guides.dataverse.org/en/latest/installation/config.html#custom-navbar-logo
13:52 Alexandre12
Thanks Don!
14:12 pdurbin joined #dataverse
14:24 poikilotherm
<Alexandre12 "Thanks Don!"> Morning donsizemore and pdurbin sirs...
14:24 pdurbin
mornin
14:25 poikilotherm
Are you guys or anyone else here aware of scripts pushing code into Dataverse?
14:25 pdurbin
nope
14:25 poikilotherm
We have some scientists around that want to do what I outlined during last years OA Week
14:25 donsizemore
the repo, or a given instance?
14:25 poikilotherm
Push code releases to Dataverse from Gitlab via CI
14:26 poikilotherm
As a dataset
14:26 poikilotherm
Citable research software
14:26 donsizemore
I'm not aware of anyone doing that specific workflow.
14:26 pdurbin
oh, that, people can do that, with APIs, right
14:26 donsizemore
though Matthew is working on similar functionality in CoReRe
14:27 poikilotherm
Pdurbin: Sure. But you know, scientists... they want it easy so I wondered about creating a shareable template
14:27 poikilotherm
donsizemore nice!
14:27 poikilotherm
Will it be push or pull? My script would be pushing, but pulling like Software Heritage Archive would make a lot of sense, too
14:28 pdurbin
By template you mean sample code?
14:28 donsizemore
what Matthew is working on would pull, allow local computation, then push
14:29 poikilotherm
pdurbin yeah, a "Musterlösung"
14:29 poikilotherm
donsizemore that's nice!
14:29 poikilotherm
And far beyond what we want for now. More options to do things.
14:30 poikilotherm
pdurbin that would be a sample solution in plain english...
14:31 poikilotherm
My idea for now is kind of copycat Zenodo/GitHub integration for pushing code including metadata in a CodeMeta file
14:32 pdurbin
Well, I have some code at https://github.com/IQSS/open-source-at-harvard and a DOI but right now the dataset doesn't have any code: https://doi.org/10.7910/DVN/TJCLKP
14:33 poikilotherm
That sounds like an interesting dataset :-)
14:33 pdurbin
But I don't know if that repo is destined to become a Musterlösung.
14:33 poikilotherm
But it's kinda meta, collecting things
14:34 poikilotherm
My scientists would like their special research software tool to be citable
14:34 pdurbin
Even more meta for this channel is https://github.com/pdurbin/dataverse-irc-metrics which doesn't have a DOI or dataset.
14:35 poikilotherm
Ha! Maybe we should write a bot that pushes the logs into a dataset?
14:35 poikilotherm
Future data scientists might want to learn about how the party got started
14:36 poikilotherm
Is chatting about science research data worth collecting and tracking? Thinking about provenance. Sometimes great ideas come out of this...
14:36 pdurbin
Maybe. Nothing's automated right now. The simple thing for your scientists to do today is download a zip from GitHub, manually create the CodeMeta file (yuck, manual), and upload it all to Dataverse.
14:39 pdurbin
Uploading to Dataverse can happen via API , of course.
14:41 poikilotherm
Yeah so that's what I would like to automate.
14:41 poikilotherm
Write a sustainable, shareable script. Configurable.
14:41 poikilotherm
Provide solutions for Gitlab CI, GitHub Actions and Jenkins etc
14:42 poikilotherm
Plus a short manual describing what steps you need to do. Like get an API token, provide a Dataverse URL , ...
14:43 poikilotherm
The CodeMeta file should live within the codebase...
14:43 pdurbin
Would the script be part of dvcli?
15:01 stefankasberger joined #dataverse
15:01 poikilotherm
Maybe? Do you think that would be a good idea?
15:08 pdurbin
Well, it needs a home. :)
15:09 pdurbin
I'd love to have any kind of story to tell about GitHub/Dataverse integration, even if it's just "a contributor wrote a script you can use" for now.
17:28 stefankasberger
@pdurbin: do you have time later on?
17:33 pdurbin
stefankasberger: maybe in an hour? Is that too late?
17:44 stefankasberger
a bit. tomorrow?
17:58 pdurbin
stefankasberger: sure. There's a community call at 11am Boston time tomorrow. How about right after? 11:30 or noon.
18:03 donsizemore
@poikilotherm on Jenkins. how would you feel about podman instead of docker?
18:05 poikilotherm
donsizemore mixed feelings. Lots of stuff is already possible, but there a few projects still waiting for Docker API compatibility of Podman 2.0. Fabric8io, JKube and Testcontainers to name a few.
18:05 stefankasberger
@pdurbin: that's perfect. see you tomorrow :)
18:05 pdurbin
stefankasberger: great!
18:37 donsizemore
any of your stuff in jenkins that might break today?
18:39 pdurbin
Who, me? No recent pull requests.
18:46 donsizemore
no, the above technologies of poikilotherm
18:47 poikilotherm
Err... TodaY?
18:50 donsizemore
no, just in general
18:50 poikilotherm
I'm puzzled. What are you guys up to?
18:51 donsizemore
new jenkins worker node. centos8. podman instead of docker. if it doesn't work for you, we tag your jobs for the old node.
18:55 poikilotherm
Ah!
18:55 poikilotherm
Well building the images should work on podman. Testing needed :-)
18:59 pdurbin
poikilotherm: are you still using "in focus"? I haven't looked lately.
19:00 poikilotherm
pdurbin not really. Things are messy these days.
19:00 pdurbin
ok
19:01 pdurbin
the postgres war file pr is a little stuck
19:06 pdurbin
blocked
19:14 pdurbin
poikilotherm: some more comments from you might help. Or maybe I should share with you some of the Slack conversation.
19:20 poikilotherm
Yeah. It's complicated. And I'm a bit all over the place.
19:21 pdurbin
no worries, just trying to help
19:22 poikilotherm
Not sure if anyone sees value in this. The goal is going for application level connections anyway, so once DV is undeployed, nothing is trying to ping the DB
19:22 poikilotherm
But I'm not sure if anyone will be happy about that...
19:24 pdurbin
This is the kind of stuff you should put as a comment in the pull request. To keep the conversation going.
19:32 poikilotherm
https://github.com/IQSS/dataverse/pull/7048#issuecomment-657749630
19:32 poikilotherm
Like that?
19:34 pdurbin
poikilotherm: looks great! If you could also resolve the merge conflicts, it would be appreciated. I assume they're from your BOM changes.
19:35 poikilotherm
Sure. Not from my mobile, though :-D
19:36 pdurbin
:)
19:43 * poikilotherm
crosses fingers landreev doesn't get p****d on me wanting to change the installer...
19:47 pdurbin
poikilotherm: he'd be happy if you hack on the perl version too. For now, we are maintaining both.
19:47 poikilotherm
O.O
19:48 poikilotherm
Wow. That's news for me...
19:48 pdurbin
Oh, wasn't that in the pull request?
19:49 pdurbin
Yeah. Leonid left a comment.
19:53 poikilotherm
Where? Postgres @ war?
19:55 pdurbin
https://github.com/IQSS/dataverse/pull/7048#discussion_r452390016
19:57 poikilotherm
Can't see it... O.o
19:58 poikilotherm
Ah ah ah inline
19:58 poikilotherm
I overlooked it
20:00 poikilotherm
Ok I'm heading home. Will update the PR. Should I include a patch with the DataSourceDefinition, too, so this becomes clearer?
20:04 pdurbin
I'm not sure what that is but I'd be happy to look at it.
20:45 pdurbin left #dataverse
23:36 sivoais joined #dataverse
