Time
S
Nick
Message
04:43 jri joined #dataverse
07:15 jri joined #dataverse
07:47 jri joined #dataverse
12:05 donsizemore joined #dataverse
13:27 pdurbin
donsizemore: thanks again for https://github.com/IQSS/dataverse/pull/4721
13:29 donsizemore
@pdurbin i dumped a production DB copy over to a test 9.3 instance (re-indexing now) to try my hand at https://www.postgresql.org/docs/9.6/static/pgupgrade.html
13:33 donsizemore
(i also hope that 9.6 will in fact be the LTS release, as there are some cool features in 10)
13:34 pdurbin
donsizemore: I'm confused. Do you want 9.6 or 10? :)
13:35 donsizemore
I never know what I want!
13:36 pdurbin
use your words
13:39 pdurbin
donsizemore: according to this we'll need to do three upgrades. 9.3->9.4, 9.4->9.5, 9.5->9.6. Unless I'm reading this wrong: https://docs.aws.amazon.com/AmazonRDS/latest/UserGuide/USER_UpgradeDBInstance.PostgreSQL.html
13:40 donsizemore
@pdurbin i was lobbying for whatever RHEL8 settles on for their 10-year plan, but only have a message board posting stating that will be 9.6
13:42 donsizemore
@pdurbin after reading some more about pg_upgrade i'm thinking i'll just do a dump-and-restore
13:44 pdurbin
I'm way out of my depth with that stuff. I'm not the one who does any care and feeding of Postgres in production.
13:45 donsizemore
a dump-and-restore will take longer but is much safer
13:47 pdurbin
gotcha
13:48 donsizemore
(and the AWS upgrade procedure, though I'm sure is well-tested, is slightly terrifying)
13:52 pdurbin
heh
13:52 pdurbin
More terrifying than the Dataverse upgrade procedure? :)
14:00 donsizemore joined #dataverse
14:03 donsizemore
@pdurbin the upgrade procedure is cake. now, the 3-to-4 migration...
14:05 pdurbin
:)
14:11 pameyer joined #dataverse
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15:40 donsizemore
@pdurbin https://dataverse-test.irss.unc.edu/ is running a dump of our 9.3 DB from this morning, imported into 9.6 on a test box using the 42.2 postgres-jdbc driver if anyone wants to hammer on it
15:54 pdurbin
donsizemore: the homepage loads fine :) ... good job. :)
15:57 donsizemore
basic dataset creation and publishing works fine
15:59 pdurbin
donsizemore: cool. If you want, please go ahead and leave a comment in the issue that things seem ok: https://github.com/IQSS/dataverse/issues/4709
16:57 donsizemore joined #dataverse
17:04 Thali_UM joined #dataverse
17:05 Thali_UM
Good morning
17:07 Thali_UM
NetBeans already let me build the project, but when entering the URL localhost: 8080 shows me the glassfish index
17:07 Thali_UM
It has happened to me frequently and what I was doing was reinstalling dataverse
17:08 Thali_UM
I solved the building error by adding a maven plugin in pom.xml
17:10 jri joined #dataverse
17:11 pdurbin
Thali_UM: if you are seeing the index page for Glassfish, that usually means the dataverse war file hasn't been deployed. Can you please tell me the output from `./asadmin list-applications`? I documented asadmin here: http://guides.dataverse.org/en/4.8.6/developers/tips.html#deploying-with-asadmin
17:12 Thali_UM
dataverse
17:13 pdurbin
Ok. So the war file has been deployed. Hmm. Can you please try a different browser?
17:15 Thali_UM
safari is it ok?
17:15 Thali_UM
I work with Chrome
17:15 pdurbin
yes
17:15 Thali_UM
it show me the same window, glassfish server
17:16 pdurbin
hmm
17:20 pdurbin
Thali_UM: can you please try undeploying and redeploying? Please see the "Deploying With asadmin" link above.
17:20 Thali_UM
it continues to mark errors when generating the WAR file, but in the end it shows BUILD SUCCESS
17:21 Thali_UM
Ok
17:22 Thali_UM
this step Copy the war file to the server , In what directory do I owe the WAR file?
17:25 pdurbin
"target"
17:33 Thali_UM
thank you
17:35 Thali_UM
the WAR file is in the target folder, but there I run asadmin or should I copy the file inside glassfish?
17:37 pameyer
I usually run the asadmin commands from the glassfish root directory (aka - if glassfish is in /usr/bin/glassfish4, I'll run commands from that directory with bin/asadmin $command
17:38 pameyer
the war file can be anywhere readable - bin/asadmin deploy /path/to/dataverse.war works
17:41 Thali_UM
should I create the database and the user?
17:41 Thali_UM
role "dvnapp" does not exist
17:41 Thali_UM
Error Code: 0. Please see server.log for more details.
17:41 Thali_UM
Command deploy failed.
17:42 pameyer
that does sound like missing database config
17:47 Thali_UM
So to do a manual deploy, should I also configure the database?
17:50 pameyer
correct. the installer does database and glassfish application deployment, so if you're doing the app deployment yourself the database config needs to happen
17:55 Thali_UM
Command deploy executed successfully.
17:56 Thali_UM
what's next?
17:58 pameyer
`curl http://localhost:8080/api/info/version `
18:02 Thali_UM
Could not resolve host: http:localhost
18:03 pameyer
could you double-check the url and port you used?
18:04 pameyer
I'm assuming glassfish is listening on 8080; if not you'll need to adjust that
18:04 Thali_UM
I'm sorry, the message is Status 404 not found
18:06 Thali_UM
shows several html tags
18:07 pameyer
I'm puzzeled - if `asadmin list-applications` shows dataverse, but an api endpoint that dataverse provides isn't responding, I'm not sure how things get into that state
18:09 Thali_UM
Me too
18:09 Thali_UM
and when I try to find more information on a particular page like http: // localhost: 8080 / dataverse.xhtml, it shows me the message 404
18:13 pameyer
is it possible that you have to instances of glassfish running?
18:14 Thali_UM
i don't now
18:15 pameyer
does `ps aux | grep glassfish` show more than one entry?
18:16 Thali_UM
two
18:16 Thali_UM
terminal and netbeans
18:16 pameyer
ok - that makes sense
18:16 pameyer
I'd guess the glassfish instance that dataverse deployed to isn't the one that's listening on port 8080
18:22 Thali_UM
How can I know the port?
18:23 Thali_UM
LOOK
18:23 Thali_UM
http://img.fenixzone.net/i/xAeo0dh.png
18:30 donsizemore joined #dataverse
18:36 pameyer
`lsof -p $glassfish_pid | grep LISTEN` should tell you which ports it's listening to
18:57 Thali_UM
look
18:57 Thali_UM
java 2412 luisolartegervacio 359u IPv6 0x3f5ef284888f29a7 0t0 TCP *:8080 (LISTEN)
18:57 Thali_UM
that means that glassfish server is not working well
19:00 pameyer
ok - so that's the glassfish listening on 8080 that doesn't have dataverse
19:00 pameyer
does 928 show a different port?
19:08 Thali_UM
Indicates that glassfish is not using port 8080?
19:09 pdurbin
Thali_UM: can you please remind me where Glassfish is running? On your Mac or on a server?
19:10 Thali_UM
MAC
19:11 Thali_UM
everything is on the Mac, first I'm doing a local installation
19:11 pdurbin
Thali_UM: are you coming to the community meeting in two weeks? https://dataverse.org/events :)
19:12 Thali_UM
That error had already happened to me in previous installations, but my solution was to reinstall but I have already repeated the installation and manually and it keeps showing me the page of glassfish server
19:13 Thali_UM
It is not possible for lack of VISA
19:13 pdurbin
Bummer! Maybe next year. :)
19:14 pdurbin
Thali_UM: I just saw that glassfish server page on the laptop of someone I was helping an hour ago.
19:14 Thali_UM
I hope can attend
19:16 pdurbin
And strangely, the war file was deployed. Same as for you.
19:16 Thali_UM
Why glassfish show that page?
19:17 pdurbin
What do you see when you run `git status`?
19:18 Thali_UM
Changes not staged for commit:
19:18 Thali_UM
(use "git add <file>..." to update what will be committed)
19:18 Thali_UM
(use "git checkout -- <file>..." to discard changes in working directory)
19:18 Thali_UM
modified: ../pom.xml
19:18 Thali_UM
modified: ../src/main/webapp/WEB-INF/glassfish-web.xml
19:18 Thali_UM
no changes added to commit (use "git add" and/or "git commit -a")
19:20 pdurbin
Ah ha! He saw the same thing. What do you see when you run `git diff` on glassfish-web.xml?
19:25 Thali_UM
http://img.fenixzone.net/i/Alzwhtb.png
19:27 Thali_UM
That piece of code is what I added to the project so that it will execute as well, add that maven plugin
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19:28 Thali_UM
But what I see is that only errors are skipped, because although I run "Build Success" I kept marking the errors in a file, in my case "dataset.java" marks it in red
19:31 pdurbin
Thali_UM: I just left a comment with your screenshot (thanks!) at https://github.com/IQSS/dataverse/issues/4722#issuecomment-393650919
19:31 pdurbin
You should put that "context-root" line back in.
19:31 pdurbin
Then recompile the war file.
19:31 pdurbin
mvn clean
19:31 pdurbin
mvn package
19:32 pdurbin
And then try again.
19:33 Thali_UM
undeploy the project ?
19:33 pdurbin
yes please
19:33 Thali_UM
Thank you Philip
19:33 pdurbin
sure
19:34 pdurbin
pameyer: it makes me think we should have people initially compile the war file with plain Maven rather than Netbeans.
19:34 Thali_UM
Sorry for continuing with the same problem, in fact I saw that several have had this problem but the solution they provide is to add the maven plugin in pom.xml
19:38 pameyer
pdurbin: that makes sense to me. netbeans integration seems like it's another step where things can go wrong
19:39 pdurbin
At the time I was thinking it's easier to install Netbeans. There's a nice GUI installer.
19:44 pameyer
I moved away from netbeans partly because of lack of multi-language support - it's got some useful features, but also additional complexity
20:56 Thali_UM left #dataverse
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21:17 Thali_UM
Error 500
21:19 Thali_UM
now if you return the version but now on the localhost page: 8080 shows me HTTP ERROR 500
21:26 donsizemore joined #dataverse
21:30 pameyer
Thali_UM: version api working but homepage crashing is progress :)
21:30 pameyer
is solr running?
21:32 Thali_UM
yes
21:33 Thali_UM
yes is progress
21:34 Thali_UM
:')
21:37 Thali_UM
http://img.fenixzone.net/i/NFhgtJK.png
21:46 Thali_UM
http://img.fenixzone.net/i/JHWcqd8.png
22:13 pameyer
looks like it crashed, and then crashed again while trying to display the error page. I'd suspect context-root, or another JSF-related cause.
22:14 pameyer left #dataverse
