Time
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Nick
Message
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13:43 tcoupin
Hi! I'm trying to build develop branch and deploy it again a 4.9.2 installation. Build is successful but when I deploy war, i've got null pointerexecption in PasswordValidatorServiceBean. Building tag 4.9.2 and deploying it is ok. Are there extra step to migrate from 4.9.2 to develop ?
13:46 pdurbin
tcoupin: hi! That sounds familiar. Let me search a bit.
13:47 pdurbin
tcoupin: is it possible that you're suffering from https://github.com/IQSS/dataverse/issues/5078 ?
13:54 tcoupin
I do not think it's linked. All excpetion stacks refer to password validator
13:55 tcoupin
Root exception :
13:55 tcoupin
`java.lang.NullPointerException dataverse_1 | at org.passay.DictionarySubstringRule.doWordSearch(DictionarySubstringRule.java:35) dataverse_1 | at org.passay.AbstractDictionaryRule.validate(AbstractDictionaryRule.java:79) dataverse_1 | at org.passay.PasswordValidator.validate(PasswordValidator.java:59)`
13:56 tcoupin
or does the DictionarySubstringRule trying to find a bundle ?
13:56 pdurbin
tcoupin: thanks. Are you on 93cd4da?
13:56 tcoupin
yes
13:57 pdurbin
Oh, I bet I know what it is.
13:57 pdurbin
tcoupin: please take a look at https://groups.google.com/d/msg/dataverse-dev/I9unpRyTxvc/hjLnfnY5CAAJ
13:58 pdurbin
and https://github.com/IQSS/dataverse/blob/db7dcf44db670f5ca1d64e2825766b80c3d65e5a/scripts/database/upgrades/upgrade_v4.9.2_to_v4.9.3.sql
14:04 tcoupin
not better :(
14:05 tcoupin
done: undeploy, stop-domain, clean generated dir, sql , start-domain, deploy
14:08 pdurbin
tcoupin: that fixed it?
14:11 tcoupin
no
14:11 juancorr
Hi @tcoupin. Have you the Dataverse in English?. Could you check to copy the Bundle.properties file to Bundle_en.properties?
14:12 pdurbin
tcoupin: can you please email your server.log file to support
14:13 pdurbin
Or create a new GitHub issue and attach it there if you don't mind it being public.
14:15 tcoupin
Hi @juancorr. Where ? Dataverse is new for me...
14:17 pdurbin
tcoupin: have you customized your password rules at all?
14:21 tcoupin
No
14:21 tcoupin
DV is install in a docker container using 4.9.2 dvinstall.zip
14:22 juancorr
I had a issue similar with a develop branch some days ago but It should be solved. I copied the glassfish/domains/domain1/applications/dataverse__VERSION__/WEB-INF/classes/Bundle.properties to glassfish/domains/domain1/applications/dataverse__VERSION__/WEB-INF/classes/Bundle_en.properties and restart glassfish to solve it
14:23 pdurbin
Hmm. I would't think Docker would matter but good to know. Did you see my question about letting us see all of server.log?
14:23 tcoupin
@juanncorr: I copied too and restart gf, but not better
14:24 pdurbin
juancorr: we are in the process of changing the bundle stuff. Please see https://github.com/IQSS/dataverse/pull/5079 and add a code review if you like.
14:25 pdurbin
tcoupin: do you get the same exception with a new installation or only an upgrade? You can test a new installation pretty easily using `vagrant up` or our docker-aio or with our new AWS script: https://github.com/IQSS/dataverse/pull/5063
14:30 tcoupin
I send server.log
14:32 pdurbin
tcoupin: thanks! I see it at https://help.hmdc.harvard.edu/Ticket/Display.html?id=267442
14:32 tcoupin
pdurbin: vagrant up in progress...
14:33 pdurbin
great!
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14:36 pdurbin
tcoupin: from the stacktrace, it looks like the war file was successfully deployed. Does non-UI stuff like https://demo.dataverse.org/api/info/version work?
14:37 tcoupin
api works yes
14:37 pdurbin
ok, so the app deploys good. what action are you taking to trigger the exception? visiting the login page?
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14:38 tcoupin
go to login page and login with dataverseAdmin and my password
14:39 tcoupin
fisrt login was made with 4.9.2
14:40 pdurbin
ok, and you ran the SQL update script I mentioned?
14:42 pdurbin
pameyer: mornin. We're discussing upgrading from the current release to the latest in "develop", which you've done quite a bit. :)
14:45 tcoupin
yes buildinuser tableis updated
14:46 tcoupin
Vagrant test: successful start, login and password update ok
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15:13 tcoupin
I think call to validate function is done here : https://github.com/IQSS/dataverse/blob/develop/src/main/java/edu/harvard/iq/dataverse/authorization/providers/builtin/BuiltinAuthenticationProvider.java#L119
15:14 tcoupin
on line authReq.getCredential("Password") seems to be null
15:14 tcoupin
and authReq is fill here https://github.com/IQSS/dataverse/blob/develop/src/main/java/edu/harvard/iq/dataverse/LoginPage.java#L163
15:15 pdurbin
tcoupin: did you restart glassfish after running the SQL upgrade script?
15:15 tcoupin
yes
15:21 cdsp-rmo joined #dataverse
15:21 cdsp-rmo
hello world
15:22 cdsp-rmo
@tcoupin I have the same problem with a fresh install of dataverse and login issues
15:23 cdsp-rmo
(I've take a look at the irc logs)
15:24 juancorr
pdurbin: Ok, I will review the code.
15:25 juancorr
tcoupin: Have you the login page in French first time that you have try the login?
15:27 tcoupin
... um ...
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15:29 tcoupin
I will recreate my container..
15:32 pdurbin
tcoupin: I just mentioned your troubles at standup.
15:33 * pdurbin
waves at cdsp-rmo
15:33 pdurbin
juancorr: thanks
15:38 tcoupin
on first login, form was in english
15:38 tcoupin
after upgrade, french
15:40 tcoupin
I have to go, i will take a look at the irc log tomorow
15:41 tcoupin
I run export LANG=C before mvn package and redeploy
15:41 tcoupin
it's working !!
15:41 pdurbin
tcoupin: great!
15:41 tcoupin
thank you very much, my end of working day is better like this
15:42 cdsp-rmo
May I ask what LANG=C is ?
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15:43 pdurbin
juancorr: so it was this bug: https://github.com/IQSS/dataverse/issues/4892#issuecomment-422417899 NullPointerException in PasswordValidator etc.
15:43 pdurbin
the bug tcoupin ran into
15:43 tcoupin
LANG=C is to avoid maven use system local
15:44 pdurbin
tcoupin: do you think you could reproduce this bug if you had to?
15:45 cdsp-rmo
tcoupin thanks
15:45 pdurbin
juancorr: or do you think you can reproduce it? We both saw it but then it went away with newer code in "develop".
15:51 pdurbin
cdsp-rmo: I just read your comment at https://github.com/IQSS/dataverse/issues/4593#issuecomment-424393409 . You're having trouble with your dev environment?
15:52 cdsp-rmo
the same problem tcoupin had
15:52 juancorr
pdurbin: I will try reproduce the bug, but Dataverse login works in our last tests
15:53 pdurbin
cdsp-rmo: ok. How to you feel about creating a GitHub issue about this?
15:53 cdsp-rmo
about the login issue ?
15:53 pdurbin
juancorr: ok. Thanks. It still feels like there's a bug somewhere though.
15:53 pdurbin
cdsp-rmo: yeah, the login issue.
15:53 cdsp-rmo
well, I can open it if needed
15:54 cdsp-rmo
I hope tcoupin won't be jealous if I open a ticket for his issue ^^
15:54 pdurbin
andrewSC bjonnh bricas candy` cdsp-rmo donsizemore juancorr pameyer: the community call is starting in about 5 minutes if you're interested: https://dataverse.org/community-calls
15:54 pdurbin
cdsp-rmo: heh, we can always close one as a duplicate
15:54 cdsp-rmo
leaving work in a few minutes unfortunatly :S
15:54 pdurbin
no worries
15:55 pdurbin
thanks for letting us know you're having similar problems
15:55 pdurbin
sometimes we say, "where there's smoke, there's fire" :)
15:56 juancorr
pdurbin: Thanks, I am interested, but I cannot assist.
15:57 pdurbin
juancorr: no worries. Thanks for recognizing the bug cdsp-rmo is seeing as being related to the translation efforts.
16:04 cdsp-rmo
pdurbin: the "LANG=C" option for maven, where should I define that ?
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16:04 djbrooke
https://docs.google.com/document/d/1Gtr7BPDeafT9AuW36HlsDJ42cT9VSC-wg1gb31YQ6Hw/edit <- Notes for the Community Call
16:05 cdsp-rmo
my dev environnement is still not workin on my side, so I can't really give an answer at the issue
16:05 cdsp-rmo
(but I added the usecase, log entries and some explanations on code side given the logs I used)
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16:06 * pdurbin
waves at jamie-ucla and dataverse-user
16:06 pdurbin
cdsp-rmo: we might want to pause this discussion until the community call is over. You are welcome to join! :)
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16:07 cdsp-rmo
ok
16:07 cdsp-rmo
I'm going back home
16:08 cdsp-rmo
happy community call everyone ;)
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16:18 pdurbin
:)
16:18 cdsp-rmo
pdurbin: the issue https://github.com/IQSS/dataverse/issues/5090
16:19 cdsp-rmo
nothing fancy, just the basic stuff
16:19 cdsp-rmo
now I really disappear
16:20 pdurbin
bye! thanks!
16:21 poikilotherm
Hi - to late to call in?
16:21 poikilotherm
I just arrived at home... ;-)
16:21 pdurbin
poikilotherm: sorry! We're still in the room but we all just hung up.
16:21 poikilotherm
Ok
16:22 pdurbin
poikilotherm: you can call in if you want. We can wait.
16:22 poikilotherm
Any options without phoning to America from home? That's quite expensive...
16:23 poikilotherm
Ah got it
16:23 poikilotherm
German number
16:23 poikilotherm
Give me a second, will fetch my headphones
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16:25 pameyer
hi makmanalp
16:26 makmanalp
pameyer: Hi! You must be Pete from Med school who was just mentioned on the community call?
16:26 pameyer
that's right
16:26 makmanalp
Awesome, well, let me reiterate that I'm super excited about what you're working on, and happy to be a guinea pig whenever helpful :-)
16:29 pameyer
good to hear - it's always good to have interested users. :)
16:30 pameyer
we designed the big data components for one specific use case, and now we're trying to generalize it
16:30 pameyer
there may be still some rought edges
16:39 pdurbin
makmanalp: it's rare for actual users to call in so thanks!
16:40 pdurbin
usually it's people who have installed Dataverse, which is also helpful, of course
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16:42 andrewSC
pdurbin: thanks for the invite!
16:43 andrewSC
I'm going to have to pass (if it's still ongoing) sorry
16:44 pdurbin
andrewSC: no worries
17:02 makmanalp
pdurbin: ah, right! That makes sense!
17:03 makmanalp
pameyer: no worries, and thanks a lot for your efforts anyway!
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17:09 poikilotherm
Thanks for re-joining into the community call :-) It's a bit difficult for me to catch you at 12:00, because that's 18:00 here and my kids are hungry at that time :-D
17:13 * pdurbin
knows about hungry kids
17:15 pdurbin
poikilotherm: it was great chatting with you. Please keep an eye on https://dataverse.org/events for dates for the next community meeting
17:16 pdurbin
When you get a chance, I'd encourage you to check out Harald Kusch's slides from his talk back in June: https://dataversecommunitymeeting20.sched.com/event/F7dc/pilot-integration-of-an-electronic-lab-notebook-and-an-open-source-research-data-repository-as-part-of-a-modular-biomedical-research-data-platform?iframe=no&w=100 %&sidebar=yes&bg=no
17:21 poikilotherm
Thx for the link :-) The people at university of Heidelberg are also using this integration between Dataverse and RSpace within the medical sector. At FZJ (Forschungszentrum Jülich) we are thinking about adapting RSpace too, but want to have Dataverse in place, up and running in production before that... ;-)
17:28 pdurbin
Hmm. I'm not sure I knew that. Thanks.
17:31 pdurbin
lmaylein has been known to make pull requests: https://github.com/IQSS/dataverse/pull/4879
17:44 poikilotherm
Oops, this doesn't seem to be public yet - at least I did not find it online. Maybe it is not ready yet... This was mentioned in a call I had with them while initially researching Dataverse as an option for us.
17:47 pdurbin
I wouldn't worry about it.
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18:37 pameyer
makmanalp: just from curiousity, do you have ballpark estimates for storage and number of files for what "big dataset" means to you?
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19:43 poikilotherm
Hey guys, just created https://github.com/IQSS/dataverse/pull/5094 ...
19:45 poikilotherm
Happy discussions :-D
19:46 pdurbin
poikilotherm: thanks! So the tabs vs spaces *are* driving you crazy. :)
19:51 poikilotherm
Its more on the braces side of life...
19:51 poikilotherm
My editors simply replace stuff with soft tabs ;-)
19:51 poikilotherm
That's it for me for today... 10pm here
19:52 poikilotherm
See you next time and good night.
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21:57 pameyer
poikilotherm: the output from https://github.com/IQSS/dataverse/pull/5094 reminds me of running sonarqube
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