Time
S
Nick
Message
08:37 jri joined #dataverse
10:15 stefankasberger joined #dataverse
12:23 jri joined #dataverse
12:26 stefankasberger
@pdurbin: do you have time for a call now/later?
12:38 pdurbin
stefankasberger: hmm. I'm about to have breakfast. I need to get to work in time for a call in 2 hours (9:30 my time). Maybe I could go to the room early and call you in about an hour?
13:01 stefankasberger
that would be great. skype or how would you like?
13:01 pdurbin_m joined #dataverse
13:02 pdurbin_m
stefankasberger: I can send you a Zoom link if that works. What are we talking about? :)
13:08 donsizemore joined #dataverse
13:20 poikilotherm
Morning donsizemore
13:29 pdurbin_m
stefankasberger: I'd like to pick your brain about https://github.com/IQSS/dataverse/issues/5899
13:43 pdurbin_m joined #dataverse
13:45 Benjamin_Peuch joined #dataverse
13:46 Benjamin_Peuch
Hello everybody!
13:47 Benjamin_Peuch
Hello, stefankasberger. We were wondering if one of the perks of pyDataverse, since it incorporates features such as Import a Dataset, could be a more user-friendly interface? Something closer to Dataverse GUI .
13:47 Benjamin_Peuch
Something less scary for non-computer scientist/technician people than the command prompt.
13:48 Benjamin_Peuch
But I saw in your presentation at Harvard (congratulations by the way!) that the target audience were the developers, so maybe it's not what we're looking for?
13:52 stefankasberger
Sure, zoom works. Have some general questions about upgrading.
13:54 stefankasberger
@Benjamin_Peuch: in general, i think thats a good idea. Slava and I were thinking about a webservice for that, which the DDI Service DANS develops right now basically is. But it is not planned for the development of pyDataverse itself. More, that another tool uses pyDataverse and builds an GUI or Webservice upon it.
13:55 pdurbin_m
stefankasberger: ok. oh! https://github.com/IQSS/dataverse/issues/5794#issuecomment-584379823 please check that out too :)
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14:04 Benjamin_Peuch
stefankasberger: Oh, this is splendid news!
14:04 Benjamin_Peuch
Thanks for your reply. :)
14:07 pdurbin
A GUI for pyDataverse sounds awesome. :)
14:08 pdurbin
stefankasberger: I just need to grab the key for the conference room. Then I'll fire up Zoom. Are we inviting others here? :) Reminder that I have a different call in 20 minutes so we'll have to be quick!
14:16 pdurbin
stefankasberger: ok, here you go: https://harvard.zoom.us/j/949521424
14:20 pdurbin
stefankasberger: will you be around an hour from now? I'm thinking we should talk *after* my meeting that starts in 10 minutes. :)
14:21 stefankasberger
sure. think after is better too.
14:21 pdurbin
phew
14:28 poikilotherm
stefankasberger: any ideas on dvcli from your side?
14:29 stefankasberger
Not really right now. Am very busy for the next 2 weeks, but then my brain is opening up again. :)
14:29 poikilotherm
Sure! :-)
14:29 poikilotherm
Good look with upgrading
14:30 poikilotherm
s/look/luck/
14:30 stefankasberger
But its not that far away from the idea of pyDataverse I think.
14:30 stefankasberger
so I think I could be helpful, in what I thought through in the last year.
14:30 poikilotherm
Yeah. Most things will be a handsome wrapper around it, so you can use it at your fingertips ;-)
14:38 stefankasberger
in which language are CL tools for unix systems developed? C?
14:52 poikilotherm
All kinds of :-D
14:52 poikilotherm
I'm doing this in Python
15:32 poikilotherm
pdurbin I just sent you guys a present on Github
15:39 donsizemore
@poikilotherm I saw! (that's still on my list for jenkins.dataverse, promise)
15:39 donsizemore
(unless that's where you ran it, then cool)
15:40 poikilotherm
Thx donsizemore
15:40 poikilotherm
Nope, ran it locally.
15:40 poikilotherm
I could do it on Jenkins
15:40 poikilotherm
Actually did
15:41 poikilotherm
But it doesn't integrate nicely
15:41 poikilotherm
No web ui for reports :-/
15:41 poikilotherm
And it's slooooooow
15:41 poikilotherm
13 minutes
15:42 donsizemore
but worth the wait =)
15:42 poikilotherm
Found 180 issues...
15:50 donsizemore
CVE-2010, CVE-2011 =(
15:51 stefankasberger
@pdurbin: are you still here?
16:05 dataverse-user joined #dataverse
16:05 dataverse-user
hi
16:06 dataverse-user
i need to change host name of server where is instaled Dataverse
16:06 dataverse-user
from Datarepositorium.sdum.uminho.pt to Datarepositorium.sdum.uminho.pt
16:06 dataverse-user
how can i do that?
16:07 dataverse-user
i already change apache configuratio to redirect form old url to new url
16:07 dataverse-user
but in dataverse configuration still use old name
16:08 donsizemore
@dataverse-user you can tell Dataverse its new name by updating dataverse.siteurl in /usr/local/glassfish4/glassfish/domains/domain1/config/domain.xml and restarting glassfish
16:09 dataverse-user
thanks
16:09 donsizemore
@dataverse-user you can tell your server/VM its new name in /etc/hostname or equivalent, depending on your OS
16:09 dataverse-user
ubuntu server
16:09 dataverse-user
already change hosts
16:09 donsizemore
still /etc/hostname
16:09 dataverse-user
and hostname
16:10 dataverse-user
on config "Identifier https://datarepositorium.sdum.uminho.pt/dataverse/ "
16:10 donsizemore
oh, and dataverse.fqdn in domain.xml
16:11 pdurbin
stefankasberger: I'm so sorry but that meeting went longer than expected and now we have standup in 4 minutes. When would be a good time for you?
16:11 dataverse-user
yes
16:11 dataverse-user
ok
16:13 donsizemore
@dataverse-user for your DOIs I think you want to do this (but if you have a ton, you may want to automate?) https://support.datacite.org/docs/fabrica-update-doi
16:14 stefankasberger
later is still good.
16:15 pdurbin
Ok, so maybe in 20 minutes or so? After standup.
16:28 dataverse-user
thanks guys. site is already using new name. "Identifier https://datarepositorium.uminho.pt/dataverse/uminho "
16:28 dataverse-user
now, we need to update DOI ?
16:31 dataverse-user
i only change this, to: <jvm-options>-Ddataverse.fqdn=datarepositorium.uminho.pt</jvm-options>
16:34 dataverse-user
i dont have "siteUrl" configured
16:37 stefankasberger
Please contact me on skype (cheeseman1983) or via email. i dont get notifications from irc...
16:40 pdurbin
cheeseman?
16:40 pdurbin
dataverse-user: you should configure siteUrl for sure
16:41 pdurbin
stefankasberger: it say "waiting for Stefan to accept invitation". I'm greptilian on Skype. This is getting weird. :)
16:45 dataverse-user
ok
18:07 stefankasberger
@donsizemore: would you have time for a chat about some upgrading questions later on or tomorrow?
18:07 jri joined #dataverse
18:24 pdurbin
boy does he have questions ;)
18:29 donsizemore
@stefankasberger absolutely! @pdurbin don't scare me like that
18:47 pdurbin
donsizemore: I mean, when *do* you upgrade PostgreSQL when you're going from Dataverse 4.6.2 to 4.18.1? I have no idea.
18:50 donsizemore
@pdurbin Odum moved to Postgres-9.3 when we migrated from 3.6.3 to 4.6.4, but the only hard requirement is PostgresQL-9.6 as of Dataverse 4.15
18:59 stefankasberger
right now?
18:59 pdurbin
Makes sense. I encouraged stefankasberger to create a Google doc (or whatever) with his thoughts on what steps to take when so that we could take a look.
19:00 stefankasberger
@donsizemore: right now?
19:00 nils`` joined #dataverse
19:00 donsizemore
@stefankasberger sure thing, that's fine
19:01 stefankasberger
skype, or something else?
19:01 donsizemore
@pdurbin https://unc.zoom.us/j/749855970 @stefankasberger
19:01 donsizemore
(or i'm donsizemore on skype if you like)
19:04 pdurbin
I already gave stefankasberger a brain dump earlier but lemme know if you have a specific question.
19:05 nils`` joined #dataverse
19:06 nils`` joined #dataverse
19:07 pdurbin
poikilotherm: if you were talking about issue twelve I'm only just seeing it. Busy day.
19:08 nils`` joined #dataverse
19:08 poikilotherm
No worries
19:08 stefankasberger
am coming.
19:08 poikilotherm
That's work for more than one day...
19:10 pdurbin
yeah
19:10 nils`` joined #dataverse
19:12 nils`` joined #dataverse
19:13 pdurbin
donsizemore: I'm so excited about https://github.com/IQSS/dataverse-ansible/pull/147 . Approved. Do you need me to do anything else for it?
19:14 nils`` joined #dataverse
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19:33 pdurbin
stefankasberger: "It takes ~18hrs to fully reindex" https://github.com/IQSS/dataverse/pull/6631#issuecomment-585931103
19:41 poikilotherm
But as long as you are on 7.x you should be good to go with an inplace reindex. I'm pretty sure that one's much faster.
19:42 poikilotherm
And once he is on 4.11, when Flyway has been introduced, it should be only necessary to update the citation block once and reindex once, right?
19:43 poikilotherm
(After moving to 4.19 from there)
19:43 poikilotherm
Btw pdurbin do you know how big Harvard DV is in terms of no of datasets?
19:50 donsizemore
@poikilotherm {"status":"OK","data":{"count":31217}} seems low
19:50 donsizemore
@poikilotherm from https://dataverse.harvard.edu/api/info/metrics/datasets
19:51 donsizemore
@poikilotherm correct, I told him that he only technically needs to re-index once, after the last upgrade
19:52 donsizemore
(by "him" I mean Stefan, unless you meant Kevin above)
20:08 pdurbin
donsizemore is all over the metrics. poikilotherm ^^ :)
22:44 jri joined #dataverse
23:23 poikilotherm
Wow guys the merge of the solr pr came quick and unexpected!
23:23 jri joined #dataverse
23:24 poikilotherm
Thank you for unblocking me, I feel delighted to merge things in dv-k8s then, now that we have kinda officiall support ;-)
23:25 poikilotherm
pdurbin if you have a second or two, please think about my comment on #6633 about creating an issue about the deprecated fields. I'm off to bed now, it's kinda late here...
